rs37788708 SNP Detail

Summary

• ID
  rs37788708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:100061965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATTGCA TTGAGTGGCC
  ATCTCTGGTG GGCTCCCCAT AACAGTAACC CTGTCAACTG GAGGAGGGTC ACAATCCCTA
  ACATCTCCTG GGCATACAAG ACCCTATACA TTTTAAAATG TAAAAATTTA TCATCTCTAA
  TTTTCTTAAG AATTCAGGTA AAAGTGACAT ATATATATTA TCCTACATTG ATCTAGCATT
  Y
  AGCACCCACC ATATGCCTTC AAGACACAGT GTACTGTTTA AGATTCTTGA TTCTGAAGTC
  TAGTTTTGCC ACTTTCAAGA GTAAGCCAGC AGCCAAGTGT AACTTGGTAC CATTTCTTTC
  CTTATTCCTA TTGCTATATC TATTGTCTTC ATGATATGGA GTTGGACTTT GGTTTGTATC
  AGGCTCTCTT ATAGCTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51789643	NES14780377	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	T		C	T	T	C
ss133427044	ENSMUSSNP6199175	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37788708					SNP	C	C	C	C	C	C	C	T	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51789643	NES14780377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100061965 () rs orientation: forward

Symbol	Name	Function Class
Rr635572	regulatory region 635572	856 bp proximal
Rr635573	regulatory region 635573	1841 bp proximal