rs37778489 SNP Detail

Summary

• ID
  rs37778489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151895285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCTGTAG TATGACATGA
  ACTGCTTGCT GTCTCCTGCA CTGCTTAACA CTTGAATTCT ATCAAGCATG CCGTCAGCCA
  GATAGTTAAC CTTAATCCTG TACACTACAA CTCCCAGCAG AACCTGTCAA CATCCAGCTG
  GATTCTCTCT GCTCTCTACA TTTTCTAGAC ACTGTCTAGT CAGGGAATGG ACTCTAGATT
  Y
  GGCATCTGCC TAGTCTTTTA ATCAACTAAC CAATTTAACA CACAAAAACA AATAGATCTT
  TGGGATACTG CCCATAGCAA CGATGTCTTT TAGTTAATCT GACAAAAACT ATGAAAAGAA
  GGAACCCTAG AGAATTGGAA CTGCAGAGAA GAGTCATGGG ACCTATTAGG AGGCCTAGGC
  ATAACAGTGT TCGATTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51060600	NES13427809	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37778489					SNP	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060600	NES13427809	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151895285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Rr587480	regulatory region 587480			within coordinates
Rr587481	regulatory region 587481			1462 bp proximal