rs37775941 SNP Detail

Summary

• ID
  rs37775941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90757509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGTGTCT CACTTATCTC AGCTTCACGA AGGGCTGTAC
  TGTTTTTTTT TTTTTGGGGG TGGGGGTGGG GGTGGGGCTG AGATTAACAA CAGTATAATG
  Y
  TCCACCCTCA TTCTAAGACT CAAGCACAGG TGTTCCTGGG CACACAGGGC ATTCGGTTCT
  GGAGGGACAC ACATAACCTA AGAGACAAAA GTCTCTCCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51360243	NES13739271	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37775941					SNP	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51360243	NES13739271	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90757509 () rs orientation: forward

Symbol	Name	Function Class
E130314K07Rik	RIKEN cDNA E130314K07 gene	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr1762	regulatory region 1762	within coordinates
Rr634323	regulatory region 634323	1292 bp distal
Tssr62048	transcription start site region 62048	755 bp downstream
Tssr62049	transcription start site region 62049	1497 bp downstream
Tssr62050	transcription start site region 62050	1510 bp downstream
Tssr62051	transcription start site region 62051	1983 bp downstream