rs37736057 SNP Detail

Summary

• ID
  rs37736057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26207899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGGATT GATGCTTTTT
  TTCTCTCCAG ATGCTGCCAG GATCCAGAAT CCTGGAGAAC CAAAGCCGCA TCCGTGTAAT
  TCCTACCATC AGGCAAGAAA TACAAACGAT CAAACAACGT TACTTCTTTG AGCTGCGATC
  AGATAATCCT ACTAATCCAA TAGATTTATC TCGATTGGAA ATTGACCTCA AAGATGAATC
  Y
  CCAGTGCTCG CGTCCAGTAG AACGATTCCG TAGCCCTATC CGGGTTACCG AAGGGCTGTG
  GTTTCTTTCT TTCCTTTCCT TTTCTTCTTT CCTTCCTGCC TTTTTTAATT TTTTAAAAAT
  CTTTTTGGAT TCTGGGTGCA CTGCTCGCAA AAGAAAAAAA AGAAAGAAAG AAAAGAAAAA
  AATGCCGAGG ACCCTGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51446386	NES14438703	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37736057					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51446386	NES14438703	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26207899 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13014	CpG island 13014			387 bp distal
Nlgn1	neuroligin 1			Intron
				mRNA-UTR
Rr574308	regulatory region 574308			1828 bp distal
Rr574309	regulatory region 574309			454 bp distal
Rr574310	regulatory region 574310			within coordinates
Tssr32822	transcription start site region 32822			284 bp upstream
Tssr32823	transcription start site region 32823			93 bp upstream
Tssr32824	transcription start site region 32824			146 bp downstream
Tssr32825	transcription start site region 32825			207 bp downstream
Tssr32826	transcription start site region 32826			245 bp downstream