rs37733385 SNP Detail

Summary

• ID
  rs37733385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:98980742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCCACT GAGCGGCCAT
  TGAAGGCCTC TCTTCACACA GAACAGATAC CTTGGAAGGG ATGCAGAGCA CTGCTACTCC
  GCACCAACAT CGCTCCCTCT TCCATCCAAG GGCTGCGCCC CGCCGTTAGA AGGGGAGCAG
  AGACGGGCTA GCTTATTTCT AGGCACAAAG GAGGCCTCAA AACAAATCTG CTCAACCTTA
  R
  TCTCCTGACA ACGGGACCCA CAGAAATGAG TAATTTTTGT GCTTAAGTCT TAAATGATGA
  CAAATAGCTT TGTTATTAAA TATAGTTTTT ATTAATCACT TTAAGACATA AATTATGAAT
  TCATACCGTC TCCCTGAAAT GCTTTTCAAC TTTTAACAGT CAAATTGATT ATACTATGAT
  TATTTCATTA ACACACCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51381535	NES13732418	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37733385					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51381535	NES13732418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98980742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr635315	regulatory region 635315			1730 bp distal
Tssr57961	transcription start site region 57961			552 bp downstream