rs37730053 SNP Detail

Summary

• ID
  rs37730053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31091119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCAAGA GACTGGCTTC
  CTTGCTCACT TCCGCCATAT TGGCGAGAAT TCTTGTCCAG TGCTTCACTG AAGGCAGGAC
  CTCATTTCCG TCCGCATGTA GCTCCCCAGA AACTTTCCTG ATAAGCTCAT TTCACAGGAT
  TACAGGATCT CACAGAGTGC TGTGTTGAGG GCTGATAAAT ATAAAGAACA CACTTCTGGT
  R
  CTTTGTCTAA GTGCTATCTT AAAAAGGAGG AATTTTCTCT TTTAAGTCTC AGACATTTTT
  CTTTTGCCTC CCTCCGTTCT TACTATGAGT ATGTTAAAGC AAAGAATTGT AGCTGGAATC
  ATATCATAAC GTCATCTGTG AGGAGAACAT CTCCGTATCT CACTCTCTTG AAATAAAATC
  AAACCCTGAA GCCATAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260153	NES13793985	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37730053					SNP	A	A	A	A	A	A	G	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260153	NES13793985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31091119 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	1145 bp distal
Rr627886	regulatory region 627886	1012 bp distal
Rr627887	regulatory region 627887	439 bp distal
Rr627888	regulatory region 627888	42 bp distal
Rr627889	regulatory region 627889	204 bp proximal
Tssr55448	transcription start site region 55448	404 bp downstream
Tssr60154	transcription start site region 60154	702 bp upstream
Tssr60155	transcription start site region 60155	618 bp downstream
Tssr60156	transcription start site region 60156	832 bp downstream
Tssr60157	transcription start site region 60157	903 bp downstream