rs37727939 SNP Detail

Summary

• ID
  rs37727939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119740671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCCC AAAGGATTAA
  GATTCTGTTC TCTTGACTTG AATTTACAGC TATGAACAAA GTCAGATGTG AGCAGGGGTC
  AGGATGTGAG CAGGGGTCAG CAGAGAGAAG GTAATAGATT AACTAATAAA GTGATGCCTG
  GAAATAGGCA AGGTCTGCTC ATGTGTTTTC TCTTTTTCCA GGCCCAGGAT GACATAATCC
  R
  GAGAGTGTCT TTCTCACAAA GGCATAAAGC ATCTTGTGGC TGGTTTGAGG GCACTACTTC
  TAGGAAAGGG AAGGTTTGTG GATCTTTCAG TCTTTCGTTG GAGGCACTCG ATCTTCTCTG
  TGAATCTGCA CCATATTTGC ATAATAAAGA AAGCCAGTGG TGGCAATCCA TTGTTTCTAA
  CTGACCATAT GCTGGATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51014274	NES13912288	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37727939					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014274	NES13912288	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119740671 () rs orientation: forward

Symbol	Name	Function Class
Gm65304	predicted gene, 65304	1125 bp downstream
Rr583954	regulatory region 583954	within coordinates
Rr583955	regulatory region 583955	1675 bp proximal