rs37720789 SNP Detail

Summary

• ID
  rs37720789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31104600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCATGTT GTGCTGACCC
  CCAACCATAA ATTAGTTTTT GTTGCTACCT CATAACTGTA ATTTTGCTGT TAGGAGTCAT
  AATGTAAATA TCTGTGTTTT CTGATGGTCT TGGGTGACCT ATGTCAAAGG GGCTGCCACT
  CACAGGCTGC ATTAGAAGAT TGTGTGCCTG GGGAAACAAA AGACACGCTG CCAAAGGATG
  Y
  GCACGAGGAA AAGGCGCGGG AACCGGACAG ATGCGCTGCG CTATAGGCTT TAAATCAACA
  ACTTTATATA ATGAGTTCTA CATGGACTCC CCAACTCAGC TACCTGACTC GGGCAACAGG
  CATCCAAGTG AATGTATGCC CTACACAAGT GGTGCTTGCT CTGAGTACCT AACTACTTCC
  AACACTCTGT GGACATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51259939	NES13793802	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37720789					SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51259939	NES13793802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31104600 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr399602	regulatory region 399602	917 bp downstream
Rr627895	regulatory region 627895	1865 bp distal
Rr627896	regulatory region 627896	1173 bp distal
Rr627897	regulatory region 627897	654 bp distal
Rr627898	regulatory region 627898	1083 bp distal
Rr627899	regulatory region 627899	1396 bp proximal
Tssr55453	transcription start site region 55453	923 bp downstream
Tssr60158	transcription start site region 60158	1324 bp upstream
Tssr60159	transcription start site region 60159	1162 bp upstream
Tssr60160	transcription start site region 60160	1128 bp upstream
Tssr60161	transcription start site region 60161	1104 bp upstream
Tssr60162	transcription start site region 60162	935 bp upstream