rs37717070 SNP Detail

Summary

• ID
  rs37717070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113052170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACACCT GAACTTTGCA
  TTCCAAAAGG AACCACCTTT TACAGATGTG TACAATGACA AAATTTTAGT AAGCAGTAAT
  CAATACCATG TGGCTCAATA ATGAAATATA CCTTTTAATG TCTTAAAATA TCAGCCTGGC
  AATATGTAAG ATACATCAGG TAATATTGGG GGAGGAGACA TCCACCTGGA AACCATTAAT
  R
  GTTAATAGCT CAGTTTATAA ATGGAGAAAA AGGAGAGAGG CATTCATGGG AGTGGAAAGT
  TAAGCTTTAG GTTGGATTCT CAATACATCT ATTGTTGTAA AACTCCCTGG ACTGAGAATA
  GGCCCAAATG TGGAACACCA CCTGACGGGA GAGGTGATAG ACACTGAAAA TTAAGGATCA
  AGGCAAAGGA TCAACAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51843820	NES14766052	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A
ss321909777	CHEV_6_113025203	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs37717070					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843820	NES14766052	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113052170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	852 bp proximal
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	184 bp upstream
Rr407325	regulatory region 407325	608 bp proximal
Rr636448	regulatory region 636448	567 bp distal
Rr636449	regulatory region 636449	within coordinates
Rr636450	regulatory region 636450	1179 bp proximal
Tssr62428	transcription start site region 62428	1108 bp downstream
Tssr62429	transcription start site region 62429	1972 bp downstream