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rs37717070 SNP Detail
Summary
  • ID
    rs37717070
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:113052170 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAAACACCT GAACTTTGCA
    TTCCAAAAGG AACCACCTTT TACAGATGTG TACAATGACA AAATTTTAGT AAGCAGTAAT
    CAATACCATG TGGCTCAATA ATGAAATATA CCTTTTAATG TCTTAAAATA TCAGCCTGGC
    AATATGTAAG ATACATCAGG TAATATTGGG GGAGGAGACA TCCACCTGGA AACCATTAAT
    R
    GTTAATAGCT CAGTTTATAA ATGGAGAAAA AGGAGAGAGG CATTCATGGG AGTGGAAAGT
    TAAGCTTTAG GTTGGATTCT CAATACATCT ATTGTTGTAA AACTCCCTGG ACTGAGAATA
    GGCCCAAATG TGGAACACCA CCTGACGGGA GAGGTGATAG ACACTGAAAA TTAAGGATCA
    AGGCAAAGGA TCAACAAAAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
ss51843820 NES14766052 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G A G G A
ss321909777 CHEV_6_113025203 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
rs37717070 SNP G G G G G G A G G G A A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51843820 NES14766052 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:113052170 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17829 CpG island 17829 852 bp proximal
Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano within coordinates
Rr379953 regulatory region 379953 184 bp upstream
Rr407325 regulatory region 407325 608 bp proximal
Rr636448 regulatory region 636448 567 bp distal
Rr636449 regulatory region 636449 within coordinates
Rr636450 regulatory region 636450 1179 bp proximal
Tssr62428 transcription start site region 62428 1108 bp downstream
Tssr62429 transcription start site region 62429 1972 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory