ACAAACACCT GAACTTTGCA TTCCAAAAGG AACCACCTTT TACAGATGTG TACAATGACA AAATTTTAGT AAGCAGTAAT CAATACCATG TGGCTCAATA ATGAAATATA CCTTTTAATG TCTTAAAATA TCAGCCTGGC AATATGTAAG ATACATCAGG TAATATTGGG GGAGGAGACA TCCACCTGGA AACCATTAAT R GTTAATAGCT CAGTTTATAA ATGGAGAAAA AGGAGAGAGG CATTCATGGG AGTGGAAAGT TAAGCTTTAG GTTGGATTCT CAATACATCT ATTGTTGTAA AACTCCCTGG ACTGAGAATA GGCCCAAATG TGGAACACCA CCTGACGGGA GAGGTGATAG ACACTGAAAA TTAAGGATCA AGGCAAAGGA TCAACAAAAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51843820 | NES14766052 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | G | G | A | G | G | A | ||
ss321909777 | CHEV_6_113025203 | CHEVERUD | SCREENING_POP | f | SNP | A | G | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
||||
rs37717070 | SNP | G | G | G | G | G | G | A | G | G | G | A | A | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51843820 | NES14766052 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr6:113052170 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi17829 | CpG island 17829 | 852 bp proximal | ||||||
Gt(ROSA)26Sor | gene trap ROSA 26, Philippe Soriano | within coordinates | ||||||
Rr379953 | regulatory region 379953 | 184 bp upstream | ||||||
Rr407325 | regulatory region 407325 | 608 bp proximal | ||||||
Rr636448 | regulatory region 636448 | 567 bp distal | ||||||
Rr636449 | regulatory region 636449 | within coordinates | ||||||
Rr636450 | regulatory region 636450 | 1179 bp proximal | ||||||
Tssr62428 | transcription start site region 62428 | 1108 bp downstream | ||||||
Tssr62429 | transcription start site region 62429 | 1972 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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