rs37716614 SNP Detail

Summary

• ID
  rs37716614
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123027622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAATAAA CTAGGAAATT
  ATACAATGTG GTGTGGAGGA GTGTTGGGGA ATGAACTCAG AACCTCCTAC AGGTTCTGCC
  ATTGACCTAC ATCCCCAGCC TCTGACAAAT TAGATCATTA GAGTGAAGAC CTAGTTGCTT
  TCGTAACAAT CCTCTAAAGC CATCAACATA CTGCCTGGAT ATTTTAGGAA AGATGATTTC
  K
  GAGGAATGTC CGCTCAGTGT TCTTTCTTGA CCCTCACACA GCCTGGTGAT TGAGAGATTG
  ATGGAAGATG GCCCACAGGA CCCTTCCCTC AGCAACTGGC TTCACAGAGT TAAACTAGCC
  AGTGCATCAG AGAACTCAGA AGAAACCCAC CATCCACTGT GCCTTCCCGG CTTGGCCATG
  GCAAATCCTG TGCAGAACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51024660	NES13910089	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37716614					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024660	NES13910089	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123027622 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			75 bp proximal
Rr584474	regulatory region 584474			705 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant