rs37701748 SNP Detail

Summary

• ID
  rs37701748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97873037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCCCAA ACAATGGATC
  CATGTCTGAG TGCAGTGTCC CTCAAAGGCT TGCTCCCAGG GTGATGCTCT TAGGTGGTGG
  AACCTGGAGA GGTAGGGCCT AGGGGTGGTC CTCAGGTCAC GGGGACAGGT TCTCAGAAGG
  GTCTGTAGGA CACTGGTCTC TCCCTCCTCC TCTTCTTCCT AGCTTAGGGC ATGAGCTTTG
  R
  CCTGTGCTCC TGCTGTGACC TGCTGCCTTC CCCTAAGGTC CAAGTCAATA CAACTACCTA
  ATTTTGTGAA AACTCCAAAA CAGGAGCCAT TTTCTGATCC TCCTCTGTGT TAGTTCATCA
  TTTCAGCCCT CAAAACCATG AGACCAAATA AACCTTGCTT TCCTGATGAT GTAACCTACG
  TCAGGTGTTT CACTTCCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763581	NES14551318	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37701748					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763581	NES14551318	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97873037 () rs orientation: forward

Symbol	Name	Function Class
Col2a1	collagen, type II, alpha 1	446 bp downstream
Rr508999	regulatory region 508999	1363 bp distal
Rr509000	regulatory region 509000	1655 bp proximal
Tssr4707	transcription start site region 4707	1732 bp downstream
Tssr132910	transcription start site region 132910	447 bp upstream
Tssr136189	transcription start site region 136189	512 bp downstream
Tssr136190	transcription start site region 136190	543 bp downstream
Tssr136191	transcription start site region 136191	756 bp downstream
Tssr136192	transcription start site region 136192	862 bp downstream
Tssr136193	transcription start site region 136193	904 bp downstream
Tssr136194	transcription start site region 136194	952 bp downstream
Tssr136195	transcription start site region 136195	968 bp downstream
Tssr136196	transcription start site region 136196	987 bp downstream
Tssr136197	transcription start site region 136197	1000 bp downstream
Tssr136198	transcription start site region 136198	1522 bp downstream
Tssr136199	transcription start site region 136199	1568 bp downstream
Tssr136200	transcription start site region 136200	1586 bp downstream
Tssr136201	transcription start site region 136201	1642 bp downstream
Tssr136202	transcription start site region 136202	1696 bp downstream