rs37691321 SNP Detail

Summary

• ID
  rs37691321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82939569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCACGC TGCACCCGTT
  TCCTAACCTC CTTTAGTGTT TTGTTGGAAT CTCATTTTTT TTTTGGTCAA CTTTTCATGC
  TAGACTGTAC GTTCCTTGGG GGCAGGGACT TGACCATGTG TCTATTTCTG TAATTCCCAA
  ATGCCTAACA GTGCAGTCAT TTCTCAATAA ATACATTTTA AATAAATGAA CAAATTCTGC
  Y
  GAAACTCAGT TCTGAGTCTG TTTAACCGAA TTCATTCAAA ACGTGTGCGA TTGTAATACC
  CAACCCCCTA ACCTTAAATT TAGTGTATGT TGCAGTTGAC ATTTAGATCA GGTTAAAAAC
  TGTGTTCCAT TAGTATGGAC TGATGAATGC TTAGCTAGCT TTAAACTATC ATTTGAGATT
  AGCATGGACA CGTAAGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990070	NES13925584	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37691321					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990070	NES13925584	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82939569 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fga	fibrinogen alpha chain			Intron
				mRNA-UTR
Rr375250	regulatory region 375250			557 bp downstream
Tssr917	transcription start site region 917			561 bp downstream
Tssr29670	transcription start site region 29670			1966 bp downstream
Tssr29671	transcription start site region 29671			1417 bp downstream
Tssr29672	transcription start site region 29672			1324 bp downstream
Tssr29673	transcription start site region 29673			1277 bp downstream
Tssr29674	transcription start site region 29674			1243 bp downstream
Tssr29675	transcription start site region 29675			1237 bp downstream
Tssr29676	transcription start site region 29676			1223 bp downstream
Tssr29677	transcription start site region 29677			1208 bp downstream
Tssr29678	transcription start site region 29678			1133 bp downstream
Tssr29679	transcription start site region 29679			1074 bp downstream
Tssr29680	transcription start site region 29680			1050 bp downstream
Tssr29681	transcription start site region 29681			948 bp downstream
Tssr29682	transcription start site region 29682			917 bp downstream
Tssr29683	transcription start site region 29683			886 bp downstream
Tssr29684	transcription start site region 29684			847 bp downstream
Tssr29685	transcription start site region 29685			801 bp downstream
Tssr29686	transcription start site region 29686			712 bp downstream
Tssr29687	transcription start site region 29687			659 bp downstream
Tssr29688	transcription start site region 29688			634 bp downstream
Tssr29689	transcription start site region 29689			610 bp downstream
Tssr29690	transcription start site region 29690			582 bp downstream
Tssr29691	transcription start site region 29691			532 bp downstream
Tssr29692	transcription start site region 29692			514 bp downstream
Tssr29693	transcription start site region 29693			487 bp downstream
Tssr29694	transcription start site region 29694			441 bp downstream
Tssr29695	transcription start site region 29695			428 bp downstream
Tssr29696	transcription start site region 29696			407 bp downstream
Tssr29697	transcription start site region 29697			380 bp downstream
Tssr29698	transcription start site region 29698			230 bp downstream
Tssr29699	transcription start site region 29699			173 bp downstream
Tssr29700	transcription start site region 29700			162 bp downstream
Tssr29701	transcription start site region 29701			130 bp downstream
Tssr33800	transcription start site region 33800			1139 bp upstream
Tssr33801	transcription start site region 33801			776 bp upstream
Tssr33802	transcription start site region 33802			652 bp upstream