rs37687997 SNP Detail

Summary

• ID
  rs37687997
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123030091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGAGCC TCGCACTAAA
  AGAAAAATCC CTGTTTGGGA CAGAATGGGG CCAATGGAGA GCGGGGAGGA CAACATTGCT
  CTTGCTTTAG CAGATTCCGT GCCAGCACCT GAATAGAACC GAGATTTAAT TATTCTATAA
  ATAGTAGCCG GGCTGTGGGA GTTTTAACCT CCACAAGTAA GCAGCTAAAA CGTAAGCTCT
  M
  TCATTACTAG AGAGTTAGAC TTTCTCAAAG AAACACTTCT ATGTTTGCCA CATTGATGAA
  TGAGAAAGAA AAGATAAAAC AAGTTTCGTT GCTGTTCTAC CTGCTGCCCG AAGAAAGCAA
  CCCTTTAAGG GGTGGGGGGA ATAAAACAAG AGCATTTTTG AAAATGTTTT CTGAAATTGT
  GCTTTTCTGA ACTAACATAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51024620	NES13910049	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37687997					SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024620	NES13910049	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123030091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	90 bp distal
Rr584473	regulatory region 584473	1571 bp distal
Rr584474	regulatory region 584474	1743 bp distal
Rr584475	regulatory region 584475	16 bp distal
Rr584476	regulatory region 584476	478 bp proximal
Synpo2	synaptopodin 2	293 bp upstream
Tssr35497	transcription start site region 35497	320 bp upstream
Tssr35498	transcription start site region 35498	285 bp upstream