rs37687894 SNP Detail

Summary

• ID
  rs37687894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17027415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTCTGT CACAGTTTGT
  TATAATTGTC CAACTGTTTT CTCCCTTCTT TCACGCATAG GTTTATTAGG ATTCCCAAAA
  GTGCTTTAAA CAAAATAAAT CAATATCTTT GATTCATCTA CCAGATCACT AAGCCTTTAT
  TAAACTCAGT CTTAGTGAAG TTGTAAGAGA ACAAATTCTA TTTAAACAGA AAAAGTGAGG
  Y
  GGTGTCTTTC TCATCAGTAA CCACAGAAAT ATAGAGCCCG AGTGAAGAAG ATTGTAATTT
  CAAGGCCATC TTGGCCATAT AGAAAGATCT TGTTTAAATA TACACACATA AAGAGCACAA
  CTAAACCAGT TGCATATTTT TGCTATTTCC ACAACCACGG TGTTCGCATA TAAAGCACAA
  GAATATCAAT AGATTTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51242735	NES13804966	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	T	C		C
ss321753302	CHEV_6_16977416	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37687894					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242735	NES13804966	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17027415 () rs orientation: forward

Symbol	Name	Function Class
Rr626745	regulatory region 626745	209 bp proximal
Rr626746	regulatory region 626746	324 bp proximal