rs37685880 SNP Detail

Summary

• ID
  rs37685880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131518511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAATATACAT GACAGAGTGC CCAAAACAAA AGCCTCAGTT TTTGCACTCC
  TATCTAGGAA GTGACACAAC ATGACCTTAT GATACACCAT CGATTGTAGA AATGAGCCCT
  GAGATACATT GGGGGGTGTA TGGAGCCACC AGAGGTAGGG GCAATTGGAG TCGGTTTCCA
  Y
  AGTACTTGTG CATGCATGTC CAAAATGCAT GGTACAATTT TCTACTACAG TCATGCCCTT
  GCAGTATTAC ATGTGTGTAT ATGTTTGTGG ATATACATGT ACTTTAGCTG GAGACCAGGG
  GCAAAACTTT AGGATTGTAT CTTTTCTTCC ATACGTGGAC CTTGGGGATC AAACTCAGTT
  GTCAGACTTG GGGGTTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51638657	NES14653929	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37685880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51638657	NES14653929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131518511 () rs orientation: forward

Symbol	Name	Function Class
Rr585383	regulatory region 585383	327 bp proximal
Rr585384	regulatory region 585384	395 bp proximal