rs37682785 SNP Detail

Summary

• ID
  rs37682785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113051311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGGCTG GCTAAACTCT
  GGCCCTACAT TTTTGAAATC CAAAATTATC ATTACTTGCT TTCATGTTTA GTAATGGCTG
  CAGACTTAGC TTTCAGCTTT GTATAGATGA AGCACAAAAG TTAAGTAAAG CTAGCAGTTT
  AAACAAATAG GATACTAGAA GTTCAATTTT TATTTCTTTA TTGCTTAGTG TAAGAGAAAA
  R
  ACATTAAAGT CTGCATTGGT CTTCTGTATC CCACAAGTCT GCAGTTATGG CTCCTCTGTC
  CACAGTTACA CTTCAAATAA AAATTAGTTC CTTGGTAACA TTTCCAGTGC TTAAAGAGTA
  ATTTGATTAT TGGCTACCAT ATTGGAACAA ACACAAAGTA TTTCATTACT TCAGTAAATT
  CTACTGGAGA CAGTATTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843826	NES14766065	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37682785					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843826	NES14766065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113051311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	1711 bp proximal
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	1043 bp upstream
Rr407325	regulatory region 407325	1467 bp proximal
Rr636448	regulatory region 636448	271 bp proximal
Rr636449	regulatory region 636449	829 bp proximal
Tssr62428	transcription start site region 62428	1967 bp downstream