rs37666911 SNP Detail

Summary

• ID
  rs37666911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65546750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTGGGCT GAGGGATACT
  GCTGCATGCC GCCGCTCCAT TCAGGAACAC TCTAAGGAAT TTGTTCTCAA CGACTCAAAA
  TTGTTGTTCT TCTTTTTCTT GTGAGTATGT GAGTGGGAGA GTGTGTGCGT ATGTGTGTGC
  GTTGGTGGAG TGACTATTGC TTTGGTTTAG TGTTCATTAA CAGTGCTCAC CATGAAGTGC
  Y
  ACTACATGCG TTGTCATAAT TAACAGTAGA GACGCGTTAT TCAGACAGGA GGATATACAG
  GGGGAGGAGC TACCGCACAG TAAGGTCAGA GAGAAAGGCT TGTGTGCGGT TTTATTTTGG
  GGGGCTGAAG TTGGAACACA GGGCCTCACA CATGTTAGGC AAGTAGTCTA CCATGGAGCT
  ATGTTCCCAC CCCCATGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50965354	NES13945805	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37666911					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965354	NES13945805	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65546750 () rs orientation: forward

Symbol	Name	Function Class
Gm65444	predicted gene, 65444	3 bp upstream
Rr577716	regulatory region 577716	1628 bp distal
Rr577717	regulatory region 577717	14 bp distal
Rr577718	regulatory region 577718	within coordinates
Tssr33467	transcription start site region 33467	26 bp upstream