rs37666633 SNP Detail

Summary

• ID
  rs37666633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26207910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTTTTTT TCTCTCCAGA
  TGCTGCCAGG ATCCAGAATC CTGGAGAACC AAAGCCGCAT CCGTGTAATT CCTACCATCA
  GGCAAGAAAT ACAAACGATC AAACAACGTT ACTTCTTTGA GCTGCGATCA GATAATCCTA
  CTAATCCAAT AGATTTATCT CGATTGGAAA TTGACCTCAA AGATGAATCC CCAGTGCTCG
  Y
  GTCCAGTAGA ACGATTCCGT AGCCCTATCC GGGTTACCGA AGGGCTGTGG TTTCTTTCTT
  TCCTTTCCTT TTCTTCTTTC CTTCCTGCCT TTTTTAATTT TTTAAAAATC TTTTTGGATT
  CTGGGTGCAC TGCTCGCAAA AGAAAAAAAA GAAAGAAAGA AAAGAAAAAA ATGCCGAGGA
  CCCTGGTTTT CCCCTAATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51446384	NES14438704	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C		C	C	T
ss134692057	ENSMUSSNP1807689	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37666633					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51446384	NES14438704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26207910 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13014	CpG island 13014			398 bp distal
Nlgn1	neuroligin 1			Intron
				mRNA-UTR
Rr574308	regulatory region 574308			1839 bp distal
Rr574309	regulatory region 574309			465 bp distal
Rr574310	regulatory region 574310			within coordinates
Tssr32822	transcription start site region 32822			295 bp upstream
Tssr32823	transcription start site region 32823			104 bp upstream
Tssr32824	transcription start site region 32824			135 bp downstream
Tssr32825	transcription start site region 32825			196 bp downstream
Tssr32826	transcription start site region 32826			234 bp downstream