rs37658491 SNP Detail

Summary

• ID
  rs37658491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152021187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTACAG AGTGAGCTCT
  AGAATAGCCA GAGCTACACA GAAAAACCCT GTCTTGAACA AACAAACAAA ACATTATAAC
  AGCTGGCCAG ACACTGTGGC ACACACTTGT AATTGAAGCA TTTGGAAGAC TGAGCCAGCC
  TGAGCTAAAG AAAGTTCAAA GCCAGCACTA GATACACAGG GAGACATAGC TCAAAAATGT
  Y
  CTTTTCACAA TTACAAAATC ATGATTGCTA CCAATCTGAA AAACAGAAAA TATAAATAAA
  TACTGTCCCA AATATCTAGA CACAAGGAAG TGGAAGACCT TCCACAATAA CGGAAAGTTT
  CACTACTATT CAGTGTTTTG TGAACACCCT TTCAAGGCCT CTCTCAAATG TGCCATAAGT
  GTGCTTCGGG TTAAGCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51059808	NES13424268	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	T	T	T	C	T	T	T
ss136102254	ENSMUSSNP4888955	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37658491					SNP	T	T	C	T	C	T	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51059808	NES13424268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152021187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			282 bp distal
Rr587524	regulatory region 587524			43 bp proximal
Rr587525	regulatory region 587525			261 bp proximal
Rr587526	regulatory region 587526			305 bp proximal
Rr587527	regulatory region 587527			724 bp proximal
Rr587528	regulatory region 587528			1016 bp proximal