rs37651187 SNP Detail

Summary

• ID
  rs37651187
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:100686142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCGTGG CCTGTGGAAT
  TCACCAAACT GGGTTCTAGT CCCAAGCCAC TTTTGTCTCC TTTCCTTCAT TTATAAAAAT
  GATCAGACTT AGCCCGGGGT TCCTGGAATC TTGTCCAGCT CTGATGATGA TGATCCTGTG
  ATGATCAGGT CGAGTTCATC TGCAAGATTG CAACCACGAC TGCCACTTGC AAGACTAGCT
  S
  CTCATTCGCT GGCACTACGC CACCTTACTG ATTGCTCAGA CTCAGACCCG CTCCTGAACT
  TATTCTTTCT CTTCTGAGCT AGCCTGTTTT CTCTTAAAAT ACAACTTCTT TCAGGGGAAA
  AAAATATGCT ACGTGTGTTT ATTTTGTGGG TATATGTATG CGAGCTTGTG ACATGGTGAA
  TGTGTGTTCA CGTGACAACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51794125	NES14788274	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37651187					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794125	NES14788274	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100686142 () rs orientation: forward

Symbol	Name	Function Class
Gxylt2	glucoside xylosyltransferase 2	Intron
Rr635698	regulatory region 635698	1009 bp distal
Rr635699	regulatory region 635699	246 bp proximal
Rr635700	regulatory region 635700	1043 bp proximal
Rr635701	regulatory region 635701	1153 bp proximal