rs37649249 SNP Detail

Summary

• ID
  rs37649249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15182792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAGGTTT TTCCACTGGG
  TGATAGCATC CCCTGACCAC ATACCTTGCC ACGGGGGTTA TAAAATAAAA GGGGCTTTAT
  TATCTAAGGT AATGTAGTTA CAGTCTCTTA TGTTAGGTAG ATTTTGGTTG TGAAAACTGG
  CATGGAGAAT CTATCATTTT CTTCAATAAC CTGCAGTTAT TCCCAGGTGA TACTGAAACT
  R
  AGGTGTGTTG ATGGCAAAGG ATATGGGGCT CTCTAGGAGC AAATGGCCTT AACACAAAGG
  ATGTACACTC TCCCCTAACA CATTTTTCCA TGATTGTTTG TGTACACTGA GAAGTATTTG
  CATTAGTTAA TTATTTCTTT TTCAAGTTTT TGTCACCTTT ATGTGTGCTT AGTGAAGCCT
  GCTATAAATT ATTTAGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51242629	NES13801343	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37649249					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242629	NES13801343	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15182792 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			within coordinates
Rr626647	regulatory region 626647			1364 bp proximal
Tssr54974	transcription start site region 54974			1777 bp upstream
Tssr54975	transcription start site region 54975			1838 bp upstream
Tssr54976	transcription start site region 54976			1938 bp upstream
Tssr54977	transcription start site region 54977			1961 bp upstream