rs37648359 SNP Detail

Summary

• ID
  rs37648359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90450304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATCAAAT GATGGACGAT
  GCTGTGAGAG TCAAGGATGC AGACTCCTGG GGAGGTGACA TTTGGGCTAA ACTCTGATGA
  GGAGGGCATA GGGGAGATGG ATAAAGTCCG AATAGGTGAG GCATAGACGA ACCAAATATG
  TAGTGGTGGG GTAGTGAGGT CCTGGAGATC CTGTTGCAGA ACAGAAGCCA AATAGAATCT
  Y
  AGGTCCCGGA AGTTATTGAC AAGCGGCCTG AGCATCTTAG CCTGGCTCTG GTTCCTGCCT
  GTCCTGTGGA TGTCTGTTCC CAGGCCTGGA GTGATGTAGA GACGGGTGTT CCAGGAAACC
  ATTTAAATGC TTAGGAATAC CATGCAAGTA TATTTGGGGG CAACTCAGAA GGCCTCGTGT
  CCAGATCTGC AGGGTGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51362833	NES13737460	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37648359					SNP	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51362833	NES13737460	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90450304 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klf15	Kruppel-like transcription factor 15			Intron
				Noncoding-Transcript-Variant
Rr634214	regulatory region 634214			1376 bp distal
Rr634215	regulatory region 634215			1943 bp proximal
Tssr57654	transcription start site region 57654			975 bp upstream