rs37645485 SNP Detail

Summary

• ID
  rs37645485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69662666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACACAG ACTGCACCTT
  GCAACCTAGG CCCCCTTACC CGCATTGGGT TACACACTCC ATTCTAAACA ATGGGATCCA
  TGTCTCTTAC CCTTAACAAC CATCAACTAT AGACATCCTA TTCAGTCATA TTCCAGTATG
  TCCTGGTACA AGAAGGTCAG ATCTGGCCTA ACCCAATTTC TGAAGCTCTC TGTAGCTCCT
  Y
  GACGGTCCAT AAGATGGCAG TCCCAGCTAA CCCTCGACCA CAGCATTTTG ACTTGAAGAC
  ACTCAAGCAA GACATGTCTG GGCATCTCAC CCACAGAAGC TAAAATAGCA GGTGCTATTT
  TAATCGTTAA ATCTATGGGG GTGGGTATTG TCTGTTGGCT GGCAAAACTT ATATGTATGC
  TCAAGGTCTG CAGTTTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50978688	NES13928561	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37645485					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978688	NES13928561	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69662666 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	within coordinates
Rr375162	regulatory region 375162	within coordinates
Rr578222	regulatory region 578222	within coordinates
Rr578223	regulatory region 578223	3 bp proximal
Rr578224	regulatory region 578224	1081 bp proximal
Rr578225	regulatory region 578225	1318 bp proximal