rs37643105 SNP Detail

Summary

• ID
  rs37643105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31091127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACTGGCT TCCTTGCTCA
  CTTCCGCCAT ATTGGCGAGA ATTCTTGTCC AGTGCTTCAC TGAAGGCAGG ACCTCATTTC
  CGTCCGCATG TAGCTCCCCA GAAACTTTCC TGATAAGCTC ATTTCACAGG ATTACAGGAT
  CTCACAGAGT GCTGTGTTGA GGGCTGATAA ATATAAAGAA CACACTTCTG GTACTTTGTC
  Y
  AAGTGCTATC TTAAAAAGGA GGAATTTTCT CTTTTAAGTC TCAGACATTT TTCTTTTGCC
  TCCCTCCGTT CTTACTATGA GTATGTTAAA GCAAAGAATT GTAGCTGGAA TCATATCATA
  ACGTCATCTG TGAGGAGAAC ATCTCCGTAT CTCACTCTCT TGAAATAAAA TCAAACCCTG
  AAGCCATAAC ACTCGTGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51260151	NES13793986	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37643105					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260151	NES13793986	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31091127 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	1153 bp distal
Rr627886	regulatory region 627886	1020 bp distal
Rr627887	regulatory region 627887	447 bp distal
Rr627888	regulatory region 627888	50 bp distal
Rr627889	regulatory region 627889	196 bp proximal
Tssr55448	transcription start site region 55448	412 bp downstream
Tssr60154	transcription start site region 60154	710 bp upstream
Tssr60155	transcription start site region 60155	610 bp downstream
Tssr60156	transcription start site region 60156	824 bp downstream
Tssr60157	transcription start site region 60157	895 bp downstream