rs37642544 SNP Detail

Summary

• ID
  rs37642544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108384159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATACATTA TGGCTTCTCA CCTTGGTTGC TACTGTTTCC
  TTCTGTGGAC TAAATTTATC CAGCATATAA GCAAGAATTG CCAGAGAAGT AAATCTTCAA
  R
  TGACAAATAT TCCAAATCTC TCCTAAGGTG TAGTTTATAC CCAGAAATCA AGGTGTAATT
  CTGAAGACGT AGCTGATAGA TCTCTGAACC TTTCATTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51815311	NES14769760	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A		A	A	G		A	A	G	A
ss133501725	ENSMUSSNP4319795	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37642544					SNP	A	A	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51815311	NES14769760	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108384159 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636092	regulatory region 636092	688 bp proximal
Rr636093	regulatory region 636093	879 bp proximal
Rr636094	regulatory region 636094	912 bp proximal
Rr636095	regulatory region 636095	1140 bp proximal