rs37641545 SNP Detail

Summary

• ID
  rs37641545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68487668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGGTCC TCAGAGTCAA
  TAATTTCCAC CGATGGCTGA TAATGATCAT TTAAAAGCAT TAGATCACAG GAGAAGTATG
  CCTTGCCTTT CAGTTCATAG CTCGGCATCC TTGGATCTCA GGGTAGAGAG TGGTGCTTTC
  AACCTCAGAT TCTGAGAGGC TATAAGCACA TTTCTGAGAG CGAGCGTTAG TATCTAGGCC
  Y
  GTCTTCTTCC TGCTTAGCTC CTTTTAGGCC ATTCTCTGCA GGAAGGACAG ACATAATGGT
  GTGGTCTTAG CTTATGAAGC TACTACAAAG CCTCCCACCG TATATTCAGC TCTTGTCTGC
  CAGGGCAGTG GCTAGATTTG TTTTATCCAG TCTTGTGTTC ATTAGGACCT CTTGGAAGTG
  AAATTTACTA CACTGTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51542867	NES14685833	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37641545					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51542867	NES14685833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68487668 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578030	regulatory region 578030	1287 bp proximal
Rr578031	regulatory region 578031	1427 bp proximal
Rr578032	regulatory region 578032	1769 bp proximal
Schip1	schwannomin interacting protein 1	Intron