rs37639148 SNP Detail

Summary

• ID
  rs37639148
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130897557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGGCCC CTCGGGTACC
  GTGTCCACTA AGGAGACAGA TGTACAATTC GATGGAATTC CTCTTCGGCA TCTCACCTCC
  CTCAGTGTTT CTTTCCTTAA AGAGAGACCA TGGGTTTGTT GTTGCCCCTT TCTATATTCT
  CAGGGTTTCC TTAATGACTG GCTGTTCAAA CAAGACAAAG CAAGAGCCAT TGGTGCTTTG
  S
  ACTCCTCTGG CCAAGATTAA ATTTTAAAAA GTTTGTGTCT GTAGAAATAT GAAAGGAAAG
  ATTGCTGTTG GCCAGCTACC TGGACTGGTA CCCACTTTTA ATCTATGACT CTTGGGGAAA
  GGTACAAACA GAAGATGCCC CTTAAGTGCC TGTCAACCCA CATGGCTGTG TGTGCCTTCA
  AGGGAGGCTC CTCAAAGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51635321	NES14651687	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs37639148					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51635321	NES14651687	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130897557 () rs orientation: forward

Symbol	Name	Function Class
Gm36603	predicted gene, 36603	within coordinates
Lef1os1	LEF1 opposite strand RNA 1	within coordinates
Rr375742	regulatory region 375742	675 bp downstream
Rr585264	regulatory region 585264	1777 bp proximal