rs37628238 SNP Detail

Summary

• ID
  rs37628238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86760730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGCACC CGACTACTCT
  TCCAAAGGTC CAGAGTTCAA ATCCCAGCAA CCACATGGTG GCTCACAACC ATCCGTAACG
  AGATCTGACT CCCTCTTCTG GAGTGTCTGA AGACAGCTAC AATGTACTTA CATATAATAA
  ATAAATAAAT CTTTAAAAAA AAAAAAAAAA AAAGAAAGAA ATGGCAGGTA GCGGAAGCTT
  Y
  GGTGCTACCA CTGTAAGGAG AAAGAGATGG AGTCCATCAG TTCACTCGGG CAAATGAAGT
  TCTAAAAGCC AGAGGCCGTT TAGTTCAAAT CACATTCTCC TGGAGAGGAT GAACCAGTTT
  TTTTTTTTTT TTTTAAAGAT TTATTTATTT ATTATATGTA AGTACATTGT AGCTGTCTTC
  AGACACTCCA GAAGAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51749644	NES14800060	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37628238					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749644	NES14800060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86760730 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633511	regulatory region 633511	1019 bp distal
Rr633512	regulatory region 633512	1038 bp proximal
Tssr57506	transcription start site region 57506	1314 bp upstream
Tssr57507	transcription start site region 57507	1739 bp upstream
Tssr61859	transcription start site region 61859	211 bp upstream
Tssr61860	transcription start site region 61860	1771 bp downstream
Tssr61861	transcription start site region 61861	1799 bp downstream