rs37613517 SNP Detail

Summary

• ID
  rs37613517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68191367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATGACG AGTTCTTTGC
  TGCTTTCCCT GTCTGATTAA TTTACCTCCC AGAGAGCAGT TACTTAAAGG GGCTTTCATG
  GATCCACTGC AGCAAAGCCA TTGGAGACGT GGCTCGTTCC CTGGTGGCTG ATAGATTTAT
  GGATATCTCT CCAGACCAAA TCTCAGCATG GGAAAGCAGG GCAAGGGAAG GAGATGGGAA
  Y
  AAATGTGTGT GAACAATTCA TGTCATTGCT TAATCGATCC AAATCAACAC AAATCTACTT
  TACTGTTTTG CAAACACTTT TAATGAATCA AGAATTGCGA ATGTTTTAGA AATAAAGCCC
  AATCGAAGTC TCTCTCTAAA TGCTGGAATT TAGAATTCAG AATTTAGAAT CCACAAGGTT
  CACATTCTAT GAAGGAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50976050	NES13930603	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37613517					SNP	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50976050	NES13930603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68191367 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	30 bp distal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	1769 bp downstream