rs37605236 SNP Detail

Summary

• ID
  rs37605236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127742679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTTTTT CCATTAATTT
  TTAACATGTA TATGTGTTCC AAAATGCAAA AATACAACCT GCTCAGTCTA TGTTACTTGT
  ATGTATGTTT TTAGGGCTGA CCATTTGATC TTAGATAACC AGCTAGTGTG TTCTTCACAG
  GGGAAGACTA TTTATTTACC TGTAGTTTGT TTTGTAGGGT GGAGGTCTGG TGATCCCTGT
  Y
  GGCTGTTGGA GAGGCCTTAG CATCAATCAT TAGGTCCATT TGGGCCATTG CTTTATTATT
  TTCAAAGCCA CAGCACCACC TACTGGCATA TTGAAGAACA GTTCTGTATG TTAGATGGAG
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51616823	NES14661517	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	C	C	C		T	C	C	T		C
ss320958548	CHEV_3_127651948	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37605236					SNP	T	T	C	T	C	T	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616823	NES14661517	PERLEGEN	MM_PANEL	f	SNP	C/T
ss135875939	ENSMUSSNP2345150	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127742679 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	within coordinates
Rr584909	regulatory region 584909	410 bp distal
Rr584910	regulatory region 584910	within coordinates
Rr584911	regulatory region 584911	70 bp proximal
Tssr31619	transcription start site region 31619	1273 bp upstream