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rs37605236 SNP Detail
Summary
  • ID
    rs37605236
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:127742679 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTTTTTTTT CCATTAATTT
    TTAACATGTA TATGTGTTCC AAAATGCAAA AATACAACCT GCTCAGTCTA TGTTACTTGT
    ATGTATGTTT TTAGGGCTGA CCATTTGATC TTAGATAACC AGCTAGTGTG TTCTTCACAG
    GGGAAGACTA TTTATTTACC TGTAGTTTGT TTTGTAGGGT GGAGGTCTGG TGATCCCTGT
    Y
    GGCTGTTGGA GAGGCCTTAG CATCAATCAT TAGGTCCATT TGGGCCATTG CTTTATTATT
    TTCAAAGCCA CAGCACCACC TACTGGCATA TTGAAGAACA GTTCTGTATG TTAGATGGAG
    GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
    GAGAGAGAGA GAGAGATACT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss51616823 NES14661517 PERLEGEN MM_PANEL2 f SNP T T C T C T C C C C T C C T C
ss320958548 CHEV_3_127651948 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs37605236 SNP T T C T C T C C C C C T C C T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51616823 NES14661517 PERLEGEN MM_PANEL f SNP C/T
ss135875939 ENSMUSSNP2345150 ENSEMBL ENSEMBL_Sanger f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:127742679 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
9830132P13Rik RIKEN cDNA 9830132P13 gene within coordinates
Rr398010 regulatory region 398010 within coordinates
Rr584909 regulatory region 584909 410 bp distal
Rr584910 regulatory region 584910 within coordinates
Rr584911 regulatory region 584911 70 bp proximal
Tssr31619 transcription start site region 31619 1273 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory