rs37601259 SNP Detail

Summary

• ID
  rs37601259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51112299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTAACAG ATGGCTGTGA
  GTTGTCCTGT GGGTGCTGGG CATCCAGCCT GGGTCCCCTG CTTTAACAAC TGACCCATCT
  TTCTAGCCCC CATGAAATTT TTTAAGCTTA GGGGAATATG AGCCTGTGTT GTTCCAGTCC
  CCACTATCGA TAAAGATTCA CTTGTGTGGC TCTAGTAAGA AAGAAAGCAC TTTGCAGAAT
  Y
  GTGGAAACTC AAAAACTCCC TTAGCTGCAG GACTAAGTGG AGGCTCTGGC CCCGCTGCTA
  ACAACCCGAT GTTTCTAAGG ACACCGACGT TGCTGCATCA GTTTCAGAAG CCTGTCTGCT
  GCCGCCATAT GTCAGTCACC ATAAAAGTTC CCGGTTTCCC TAGAGACAGC CGCAACTGCT
  GACCACCTGT GCTGCTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51524066	NES14689624	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37601259					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51524066	NES14689624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51112299 () rs orientation: forward

Symbol	Name	Function Class
Rr576237	regulatory region 576237	1817 bp distal
Rr576238	regulatory region 576238	681 bp distal
Rr576239	regulatory region 576239	212 bp distal
Rr576240	regulatory region 576240	1707 bp proximal