rs37600810 SNP Detail

Summary

• ID
  rs37600810
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130909583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATTTTT AGATTTAGGC
  TGAGATGAAT GAAGTAGAGA TTCATGAGTT ACGAAATCAA ATGGAGCCAA GTCGGAGGAG
  CCATGATAAA ATATATATAA AATATATATA TATATATTCT GTGTTTCTGT GCTGATGAGT
  GGAGGGAAGT GGATTCCGTC TTTCCGTGAA CTAAGGACCA GGTAGCTTTC AAAGCCCTAA
  R
  CTGTTTAGAG TCAGAGCTGC TGAGGCTCAT TTGGATCTAG ACATTCAGAA TGTTATTTTG
  GCCTTTGAAA ATGTCTTGCT TCATTACCTT AGCTATTGTT TTAAAAGGGG AGGCACAGGG
  GAGCCATTTT CACTTTGTTG TCAACTGGGG AAATATCTGA AGTTGTTGCT TTTTCGTTCG
  TTATTTACTT AAAGTTGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51635312	NES14651380	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37600810					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51635312	NES14651380	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130909583 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lef1	lymphoid enhancer binding factor 1			Intron
				Noncoding-Transcript-Variant
Lef1os1	LEF1 opposite strand RNA 1			1971 bp upstream
Rr585272	regulatory region 585272			136 bp proximal
Rr585273	regulatory region 585273			1419 bp proximal