rs37598482 SNP Detail

Summary

• ID
  rs37598482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101441684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACCCCTTT CTTGTCAAGG ACAACTTAGT CCCTTTGGAC
  TGGTACAGAA AGACTTGTGA GAGACCTAGA GTTAGGAAGA AGGGAAGAAC CAGCCGCATG
  Y
  GAGTAAGACA TCAACCACTT TTCATTACAG CTCCCTGACA GATAGTGAGA TCCTGGGGAA
  GAAGAGTCAG TGCCTGACTC CCCAAGATGA GATAAGCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51584228	NES14670157	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C	C	T	C	C
ss135548195	ENSMUSSNP415838	ENSEMBL	ENSEMBL_Sanger	f	SNP					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs37598482					SNP	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51584228	NES14670157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101441684 () rs orientation: forward

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Gm65570	predicted gene, 65570	150 bp upstream
Gm65575	predicted gene, 65575	1391 bp upstream
Rr582075	regulatory region 582075	682 bp distal
Rr582076	regulatory region 582076	1924 bp proximal