rs37598299 SNP Detail

Summary

• ID
  rs37598299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116646739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTCTCT GTGTAGCCCT
  GGCTGTCCTA GAACTCCCTC TGCAGAGCAG GCTGGCATCA GACTCAAGAG ATCTGCCTGC
  CTCTGCCTTC CGAGTGTCAG GATTAAAGGC GTGCGCCAGC TCAGTTTTCC ACTTTCAGTT
  TGGGTCTTTG AATGTGTGTA CTGAGGTGGG CGGCCACAGC TGAGTAGGGG CCCAGGTTCT
  R
  ACTAAGGGTT CAGTAACCAG TGAGCACGGG TTTGCCTTTA AGATTCCTCA CTGGGCTGAT
  TGGAGTCTGC TGTCACTTAC TCTCAAGCTC ACAGTGTCTC AGTGAGTTGC AGTATACCTA
  AGGGGTGACT TAGAGACTAT TGCTGTCAGG GAGAGCTTGA AGAGGGAGAA CATCCACTCC
  TGAGGAAGCA GAGTGGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51859259	NES14882306	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37598299					SNP	G	G	G	G	G	A	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859259	NES14882306	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116646739 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	672 bp distal
Rr637229	regulatory region 637229	595 bp distal
Rr637230	regulatory region 637230	206 bp proximal
Rr637231	regulatory region 637231	482 bp proximal
Rr637232	regulatory region 637232	1461 bp proximal
Tssr58383	transcription start site region 58383	380 bp downstream
Tssr58384	transcription start site region 58384	311 bp downstream
Tssr58385	transcription start site region 58385	1767 bp upstream
Tssr62604	transcription start site region 62604	1387 bp upstream
Tssr62605	transcription start site region 62605	1363 bp upstream
Tssr62606	transcription start site region 62606	1629 bp downstream