rs37596729 SNP Detail

Summary

• ID
  rs37596729
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36820418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGAGAGA ACAATTAGCA
  GTCTTGGTGG TTATGGTGAG CCATTTTTAA CAAAGATCTA TTTTTACTTT TAAAGAACAT
  AACTGAATAA AACAGCATGC TGTGCTCAAT GATTTAATTA GCTTCTCCTA CTGGAAGACA
  AGCTGCTCCA ACCCCAGACC AAACCCAAGT ACCTACCCCT GCTCCTCAAC AACAGCTTGC
  M
  CTAGTTAAAG AGCCTTAGAA ATCTGACTGG GTGCTAGGCT TATAAACTTA GCCTTAAAGC
  AGTGAGGAGA TCAGAGGAGA AATATTTCTC CTTTGCTGCC TTGAGATCTA AAAATAGAAT
  GGACAAGCCA CAGGATTCAG GGTGGTTTCA TGTATTATGG AAGGCAACAT ATAAATAATC
  AGAAGACTCA CTGATTATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51285893	NES13783664	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A	C	A	A	C	A	C	C
ss133122103	ENSMUSSNP7218582	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37596729					SNP	C	C	A	A	A	A	A	C	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51285893	NES13783664	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36820418 () rs orientation: forward

Symbol	Name	Function Class
6430604M11Rik	RIKEN cDNA 6430604M11 gene	within coordinates
Rr628572	regulatory region 628572	1438 bp distal
Rr628573	regulatory region 628573	606 bp distal
Rr628574	regulatory region 628574	within coordinates
Rr628575	regulatory region 628575	842 bp proximal
Rr628576	regulatory region 628576	1799 bp proximal