rs37596046 SNP Detail

Summary

• ID
  rs37596046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113303810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCTGAG ATTGCACCGA
  AAGCCCTGAA ATGGCAGAGC CGGGTCTCTG GCAGCCAATC GCCAAGCAGC GAGGCCAGCA
  GGCCAACCGC TCCCACCTCA CAGGCCCGCC CACTCCGGCA CTCCCGAGTT CTCATTGGTG
  CTTCGTACTT TCTTCTCGGA TTGGCTACCT CTAGGGTCAA ATAAGCGGGA GCAAGGATCT
  R
  CTTCCGGTGG GAGTAAACTG GGACCCGGAA GAACCATACT GGCGCGCCTT TCCAAACCTC
  GAGGGCTGCG CAGGAGGAGG AGGCGCGCGC CGGGAGGTCC TGGGGGCGGG GCCACGTCCG
  GAGGAAGAGG CGGGGCGTGC TGCACGGGAG AGCGGAGTGG GGCGTTTAGG GGTTTGGTGG
  TGTGCGAGAG GCTTTCCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	MOLF/EiJ
ss51842359	NES14762166	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	MOLF/EiJ
rs37596046					SNP	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842359	NES14762166	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113303810 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	1989 bp downstream
Cpgi17839	CpG island 17839	within coordinates
Gm15492	predicted gene 15492	29 bp upstream
Ogg1	8-oxoguanine DNA-glycosylase 1	149 bp upstream
Rr399830	regulatory region 399830	within coordinates
Rr636489	regulatory region 636489	128 bp distal
Rr636490	regulatory region 636490	within coordinates
Tssr58194	transcription start site region 58194	141 bp upstream
Tssr58195	transcription start site region 58195	170 bp upstream
Tssr58196	transcription start site region 58196	376 bp upstream
Tssr58197	transcription start site region 58197	394 bp upstream
Tssr62435	transcription start site region 62435	164 bp upstream
Tssr62436	transcription start site region 62436	99 bp upstream