rs37595576 SNP Detail

Summary

• ID
  rs37595576
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108203613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCGGAT TCTTTGCATG
  GATGTATAGT GACCAAATCC ACCCTGTTTT GATCTTGTGT GTTTACTGTC TGCCTGGACT
  TGGATGTGTG CCTTAGGACA GGATCCTAAC GTGCGTGTTG AATGTGTATG TCTTTAGGAC
  AGGATCCTAA CGTGTGTTGA ATGTCAGGAC AGGGTCTTTC TAAGTTTTGA CCGTCTTTCA
  K
  TGTCTTTGTG GGTTGAGTCA CAGCCAATGT TTGGCCAATG CCAATCAAAG AGAAATTCAA
  CTCAGTATTG TTTTCAAATT CTTGGGTCCC ACAAGTTCTT TACATGCTTA AAAACTTTTG
  AGAAACTCCA AACACCTCCA TAGATATTAG ATATGAGATA TGATATATGT TAGCCTATAT
  CTATCATATT AGAAAACATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51819419	NES14773439	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	G	T	G	G	G	G		G	G	T	G		G
ss133497788	ENSMUSSNP5937981	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321892116	CHEV_6_108176646	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37595576					SNP	T	T	T	T	T	G	T	G	G	G	G	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819419	NES14773439	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108203613 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636058	regulatory region 636058	1026 bp proximal