rs37584687 SNP Detail

Summary

• ID
  rs37584687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108422665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGTTCA CGTTGCCCTG
  TCTGTTGTGT CAGCGAGCAG ACAGGGACTT CTGAACCCTC GCAGCTTTAA AGCAAGACTT
  TTGTTTGTTT GAAGTCATAT TAGCTGTTTA GTTATTTCCA TGGGGAGTCC ATTTCTGAAG
  TCATGAAAAT AATTATTAAA AAATAGTAAT GATTGGACAA GTGAGCCATA GGATGACACC
  Y
  GTGTAGCAGG TACTCGGCAA TGAAAGTATG CTAAGCCGGT AAGCAGTCAG TAGCTAGGTC
  CATCTCACAC ACACTAGGCT GAATGAAAGA AGTCAGTGAG TGTACAGACA GCAACACACT
  CTAAATTGTA TCTATCTGGT TCTTTGGAAA GACAAATGGT GATGAAGACC AGATCGGCCC
  ACAGGGTCAG GGGTCACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51814139	NES14768984	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37584687					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814139	NES14768984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108422665 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636107	regulatory region 636107	314 bp distal
Rr636108	regulatory region 636108	1210 bp proximal
Rr636109	regulatory region 636109	1556 bp proximal