rs37580589 SNP Detail

Summary

• ID
  rs37580589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116647655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCCACA GAAGCTTTCA
  CAACTCCTAG GTCCGGGGCC CTTTTCCTTT TCTTTCCACA GAAGGCCAGA TTCTGGTTCT
  TTACATCACT ATGGGATCTA GTCCCTCTGG ATCGGCTGCA GAAGGAACAA GGGGTTGGCT
  ACCACGGGGG CGGAATACTC AGGACATGAG AACTTGAGTG CACCTAACAG CCTTTTATGA
  Y
  GAGCCTATGG GCAGCCTGCT TTGCAGTCTG TAGAGGGCCC TTCCCAAACT GTGGTGACAG
  TACTGTCCTC ACTTGGCAAT ATGGGCAATG GGTCAACATC TAAAGTAAAA TGTAAGTTGG
  TCAGTGAGAC CAGACAGCTT GGCCATCTCT GCTCTCACCT GTCCTGGTAC GCACGATTCG
  TTGATGCGAA CCAATTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51859256	NES14882309	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37580589					SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859256	NES14882309	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116647655 () rs orientation: forward

Symbol	Name	Function Class
Gm67954	predicted gene, 67954	1960 bp upstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	1588 bp distal
Rr637229	regulatory region 637229	1511 bp distal
Rr637230	regulatory region 637230	within coordinates
Rr637231	regulatory region 637231	413 bp distal
Rr637232	regulatory region 637232	545 bp proximal
Rr637233	regulatory region 637233	1559 bp proximal
Rr637234	regulatory region 637234	1971 bp proximal
Tssr58383	transcription start site region 58383	1296 bp downstream
Tssr58384	transcription start site region 58384	1227 bp downstream
Tssr58385	transcription start site region 58385	851 bp upstream
Tssr58386	transcription start site region 58386	1100 bp upstream
Tssr62606	transcription start site region 62606	713 bp downstream
Tssr62607	transcription start site region 62607	1745 bp downstream