rs37573844 SNP Detail

Summary

• ID
  rs37573844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86759927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGGTTTT TATCTTATGT
  GCATTGATGT GAGGGTGTCA GATCCCCTGG AACTGGAATT ATAGGCGGCT GTGAGCTGCC
  ATGTAGGTGC TGGGAATTGA ACTCAGGTCC TCTGGAAGAG CAGCCAGAAC TCTTAACTTC
  TGAGCCATCT CTCCAGCCTG TTCATTCTGA TTGACTTCAC TCTTTAAAAT GCCTTAGTTT
  Y
  CCCAAATTCA TTAACTTTGG ATTTTAAAAT GCACTAACTT CCTGCTCCTG CAGGACCGAA
  GTCACCTTGA GTACTGTGTA CAATACACCT GCCAGGCAGG ATGCTCCCTT TCTAGTGTTC
  CGTGAGCAAC TAATTGGTAC CAGCAGCTTT GCTCACTTTG AATATTTTTT TCCGGTCACT
  GAGCAACATT TTAATGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51749650	NES14800087	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37573844					SNP	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749650	NES14800087	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86759927 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633511	regulatory region 633511	216 bp distal
Rr633512	regulatory region 633512	1841 bp proximal
Tssr61857	transcription start site region 61857	1981 bp upstream
Tssr61858	transcription start site region 61858	1917 bp upstream
Tssr61859	transcription start site region 61859	577 bp downstream