rs37564814 SNP Detail

Summary

• ID
  rs37564814
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8950321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTAATTT CATTTGTATC
  TAGGCTGCTG AGAGCGCTCC CTGCTCTGTA AAGTGGATGT CAGGTGGATC TATGTTTTTG
  AAGGAACAAA GACTCAGCCA AGGCACCGCC AAGGAAGTTT GAGAGGAGGG AGGATGCAGG
  CTGCGTGCTG GTACGTTCTT CTCCTCCTGC AGCCCACCGT CTACTTGGTA AGTGGCGATC
  K
  GTCCGGTCCG GCATCTTTGA GATACCTCCC TAGCCTGGAG GCCAAGCAAC TGGGGTGAGA
  GGGGGGGGGG TGCGGGAGGG CGAGGCCGCC AGTTCAGTGA GAGCTGAGTG TTCCCAGAGA
  GTGGAAGAAC TTTGGGAAGC TTTGGTTTGG ATTCCTGCGA GAGTTTTTCA GGCTCTCATC
  CTCATTTTTT GCTCTATTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ
ss51545577	NES14860425	PERLEGEN	MM_PANEL2	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ
rs37564814					SNP	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51545577	NES14860425	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8950321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nxph1	neurexophilin 1			Intron
				Noncoding-Transcript-Variant
Rr626455	regulatory region 626455			1697 bp distal
Rr626456	regulatory region 626456			1671 bp distal
Rr626457	regulatory region 626457			635 bp distal
Rr626458	regulatory region 626458			1254 bp proximal
Tssr54925	transcription start site region 54925			1883 bp downstream
Tssr54926	transcription start site region 54926			1719 bp downstream
Tssr54927	transcription start site region 54927			1702 bp downstream
Tssr54928	transcription start site region 54928			1392 bp downstream
Tssr54929	transcription start site region 54929			1358 bp downstream
Tssr54930	transcription start site region 54930			1253 bp downstream
Tssr54931	transcription start site region 54931			635 bp downstream
Tssr54932	transcription start site region 54932			491 bp downstream