rs37560343 SNP Detail

Summary

• ID
  rs37560343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31105156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTGGCA GTTCAAACCT
  GGATTCTCTG CTGGAGCAGT CAGCACTCAG TCATGAGCCA TGCTCCAGCC CCACTCTGTA
  TCTCTTTGCT CCATACTGAT TTCCACAGGT CTGCAACCAA GCAGAAGCCT TGGGAGTTTC
  CAACTTCTCT CCTCCATCCT CACTAGATAT TTCAGTCCAA ATGGTGGGGA AGCCTCGTCT
  K
  TACAACATAG ACTTAAGAAT GTTATGAAAT GTGAAGTATG GAAGCTTGTT CCTTCCATAA
  CACAAGCTTT TATCTTAACC TTCTATATGT TTCCACAAAT ACTTTCTGAA TCGAGAAGTC
  CAACTAAGAA AACCAAGTAT TCGCAAATAA AATTTTGTTT CAGGATCATT ATCTACTGGG
  ACATCCCAAC ACCAACAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51259929	NES13793785	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37560343					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51259929	NES13793785	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31105156 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr399602	regulatory region 399602	1473 bp downstream
Rr627896	regulatory region 627896	1729 bp distal
Rr627897	regulatory region 627897	1210 bp distal
Rr627898	regulatory region 627898	1639 bp distal
Rr627899	regulatory region 627899	840 bp proximal
Tssr55453	transcription start site region 55453	1479 bp downstream
Tssr60158	transcription start site region 60158	1880 bp upstream
Tssr60159	transcription start site region 60159	1718 bp upstream
Tssr60160	transcription start site region 60160	1684 bp upstream
Tssr60161	transcription start site region 60161	1660 bp upstream
Tssr60162	transcription start site region 60162	1491 bp upstream