rs37557135 SNP Detail

Summary

• ID
  rs37557135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130739869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCTCTC AAAACCTGAT
  CCCTCCCTGG TTTGTTTCAA GTGGAGCCAG GGGATCCGGA CTTAATTAGC AGTGATATAT
  CTCTCATACT GATCAGTTCC ATCCAGCTTC CCCCTGGGGC CCCAGATTTG TCTCTATTTG
  GAATCCCCGT GCTTGCTGGG CGGCTGGTGT TTGCAGTTAG CTGGCAGCCG CTCGCTCGCT
  Y
  GCTTGCTCGC TTGCTCGCTT GCTCGGAGAG CACGCCGGGT GGGAACACTC GCCGGGTGGC
  GGAGCAGGCA GCCTTTGGCG GGGCTGGGGA GGAGACAAGT CCTGGCGGCT TCCTTCAGCC
  CAGTGCCCAC AGCCAAAGGC CAGGCTGGGA GACAGCCCCT CCTCAGACAC CGGAAGAGAC
  TCGGGGAGGC TGGGAATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51636341	NES14654934	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37557135					SNP	C	C	C	C	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51636341	NES14654934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130739869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13830	CpG island 13830	within coordinates
Gm65596	predicted gene, 65596	within coordinates
Rr585244	regulatory region 585244	within coordinates
Rr585245	regulatory region 585245	1162 bp proximal
Tssr35670	transcription start site region 35670	1095 bp downstream