rs37557020 SNP Detail

Summary

• ID
  rs37557020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127743333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCACTGC CTTCTGAAGA
  TCTGGCTTCT GATTTTTCAG TCCCTGTAAC TTGCCTCTTT CTCCACAGAA GTCTTACTGC
  ATGGACATAT TTTTGAGCAC GAAGACTCTT TGTCTTGACT TCGTTTTTCT TCCCTGGATG
  GACCCTTCAT GACATCAACT CGGGAAAAAG GATCCTCTGA ACTGGCTGAG CCCTCAGTGG
  R
  TTCCATAGTG ACTGTCTTGC GTAGAACCTA TAGGCCCGTG TTAAGTGTCT AGATACGCAC
  CTTTCTCTTA AAACAGTTTG ATTTAGCAGG GGTCACGAGG CCCTGAGGGC TGCATTTTAA
  TATGTGCTTT GGGTGTAGGG TACAGACCTC GTACCTGAGA AATCCTAGTC TATGGGGTAA
  ACTGTTCTTC CAAGCACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51616805	NES14661499	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A	G	G	G		G	G	G	A		G
ss135875966	ENSMUSSNP3072861	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
ss320958558	CHEV_3_127652602	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37557020					SNP	A	A	A	G	A	G	A	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616805	NES14661499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127743333 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	363 bp downstream
Rr584909	regulatory region 584909	1064 bp distal
Rr584910	regulatory region 584910	265 bp distal
Rr584911	regulatory region 584911	563 bp distal
Tssr31619	transcription start site region 31619	619 bp upstream