rs37556410 SNP Detail

Summary

• ID
  rs37556410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31090331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTCCACG TCAAAACCAG
  AAGTAGAAGA CAAGGCGAAT CATGTTGCTA CTGAATGTGA CTGAAATCTA CCATGATTTA
  ATATCTACCA TGTATTTAAA ATTCTTAGAT TAGGGGATAT GAAATATGGG TGTGTGTAGG
  GAGATGGGAG TTGGATCTGG ACAGAGTACA GTGTAAGTAT GATCAAAACA TACATGCCTG
  Y
  ATGAAAGTCT CAAAGAATTA ACAAATTATT TTTTAAAAGT AAGCATAAAA TAGAAACCTA
  GATTATTTCC TTCACACACA CACAAAAAAA AAAAAAAACA GAAAAAAATG TAATCTTTGT
  AATGTAACTG GTAACAAATT TCATCTGGGT AACTTGTTTC TTTTTAATTC AGAAAGAAGA
  AAAACATACA TATAAATATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260167	NES13793978	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37556410					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260167	NES13793978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31090331 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	339 bp upstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	357 bp distal
Rr627886	regulatory region 627886	224 bp distal
Rr627887	regulatory region 627887	180 bp proximal
Rr627888	regulatory region 627888	350 bp proximal
Rr627889	regulatory region 627889	992 bp proximal
Tssr55448	transcription start site region 55448	374 bp upstream
Tssr60154	transcription start site region 60154	77 bp downstream
Tssr60155	transcription start site region 60155	1406 bp downstream
Tssr60156	transcription start site region 60156	1620 bp downstream
Tssr60157	transcription start site region 60157	1691 bp downstream