rs37543983 SNP Detail

Summary

• ID
  rs37543983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:96455409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCTGGCA TTAAAGTGTG
  CACCACTACA CTGACCCTTG AAACTTGAGG CTTCAATCTC TTCACAGACC AAGGCAACAC
  CTCCCTCCCT ACTCTATCCA TCCATGCATC GTAACAGGTT TCGTCCTCCA TCTCAGGGAG
  AAAGGCTGTG TAATCACTGT TCTCAAAATC AGTGTCAGGA AACTAGCAGC AACGTGGAAC
  R
  GGACAACGGC AGAGCTTTAG AAGCCAAGAC TGCTCAGTTC CTGCCCATTC TCAGGACGAA
  GTATTTATCA CCACCACATA GCAGTGAAAC TACATGTTTC CTGAAATAAA ACTCATGTAT
  GGCCTCTTGT ATGTACAGTC TGTCTGTGTG TGTGTGTGTG CGTGTGTGTG TGTGTGTGTG
  TATGCATGTG TATTAATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50995750	NES13927707	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37543983					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50995750	NES13927707	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96455409 () rs orientation: forward

Symbol	Name	Function Class
Rr397861	regulatory region 397861	424 bp downstream
Rr581314	regulatory region 581314	110 bp distal
Rr581315	regulatory region 581315	523 bp distal
Rr581316	regulatory region 581316	1339 bp proximal