rs37541213 SNP Detail

Summary

• ID
  rs37541213
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151896665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTTGAT CCATTTGCTA
  AACCATGTGA CTTCTGGATT GTTTGGATGC AGGGACCTTA ATGGTCCTAC TATGAACAAT
  CAGGAACATG TCTTTGTATG AGCAAATGTT TTGTCTTGTT TATTTTTCTT TTTGATTCCC
  AGGAATAAAA CTACTAGATA ATATAATAAC TTTAAACCAT AGTTATTTTA TTCACTTTTT
  W
  AAAACGAAAC CATTTTAAAT TTCAGATGTT AAAAGAATTT CACAACTTGA ATAAACAGTA
  TTAACGGTTC TCTTAATTGT AAATGTGGAC AGTCTAGATT TCTGTTACTA TTGGAGAGGC
  CTACAGACTC AGGAACACAA GCACGGACAA TGCGAAGGAG AGAAAGGAGA AAAGCTTCCT
  CACACAGAAC CTCCAGGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51060598	NES13427765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37541213					SNP	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060598	NES13427765	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151896665 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm64624	predicted gene, 64624			1301 bp upstream
Rr587480	regulatory region 587480			1320 bp distal
Rr587481	regulatory region 587481			82 bp proximal
Rr587482	regulatory region 587482			798 bp proximal
Rr587483	regulatory region 587483			811 bp proximal