rs37535790 SNP Detail

Summary

• ID
  rs37535790
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149053396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTGTGAT AGTAAAACAT
  CAGGGGGCGC TCCCTGAAAG CGTGGGGTGA AGAAGAAAAG TGTGATCACT TGCCTGTTGT
  GCTCCTGCAC TTTGTGAATT AGTTTGTACG GGCCAGGCAC TCAACCAAGA TGCTCAACAT
  TGATGAATAA GTTCATTTGT CTTGGTTACA AGGCTCTGAG GGATACTATT TGGATGCAAA
  M
  CATGCATTGT TTCCTTCTTT CCTCATCAGA GGGCCATAAT TAGCCAGCCA CAACTAGGAA
  TACACAAAGG AAATTGACTA TTTCATGTAT GTCATATATT CAATAATATT TATATCACGA
  GAAGATAAAT AGATACTTTA AAGCCAGCTA CAGGATCCAG TGAGGGACAA AACTTGGTAA
  AACCATAAAC TCTTTAAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51053428	NES13895469	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37535790					SNP	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053428	NES13895469	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149053396 () rs orientation: forward

Symbol	Name	Function Class
Gm30382	predicted gene, 30382	within coordinates
Rr587309	regulatory region 587309	198 bp distal
Rr587310	regulatory region 587310	167 bp distal
Rr587311	regulatory region 587311	725 bp proximal
Rr587312	regulatory region 587312	1361 bp proximal
Rr587313	regulatory region 587313	1835 bp proximal