rs37525604 SNP Detail

Summary

• ID
  rs37525604
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113071217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTCTTA GAACCATGCA
  CTTAGGTGAA TTATAACAGA TTTAATTAGA ATGACCACAC AGCTAAATAA TATGGTATAT
  CAAATCTGTC GATTTCAAGA TCTTTTCATT ATACCATGTC ACTCTTCTGA TTTCAGGAAC
  CTTTGACTGT GCTGTTAAAA TCTTCACTTT CTTCCATTTG TTGTTTAGAT ATATTTTGAG
  K
  TTTTTTTCCT TCAGGCTGCT TTGTCAGAAG AGGAAATAAA TGGGAAGTTA TTGAGAGTTA
  TCCCTTATTA TAGTGATTGC AAATTCTTAT TTCCTGGTAA TGGGAGGCAA AGCTTCCAGA
  TATCTGTATA CCATAAGTTG CTTTTGAGCC TCCTTTATTC CAGACTAGTT GCAGTTCAGA
  AGATATATAT ATAGAGCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51843774	NES14765747	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37525604					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843774	NES14765747	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113071217 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636457	regulatory region 636457			1212 bp distal
Rr636458	regulatory region 636458			1174 bp distal
Setd5	SET domain containing 5			Intron
				Noncoding-Transcript-Variant