rs37520899 SNP Detail

Summary

• ID
  rs37520899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152723725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCATGG CGTTGGCATC
  ATAAATATCC TGAGAGTCTC ATCCATTACA AAAATAAAAG GGGAAGAAAA GCAGTTTATG
  GGAACAGTAA CCATCATAGA GTAAGCAAGA AAGGAACAAA ATGATTTGTA CGTCTGTCTT
  TCGCTAATTG CAGAAAGACG ATGTAAATCG GCCACTAGTG TGTGTGGCTG TCCCGCAGTA
  Y
  GCAGTGGCTC CTCACTTCTG GCTCCCGCCT CCTTCCAACC GCAGGAGGTA TCTACAGTGG
  CCATAGCTCT GGTTCTAGGC GATTGCCAAT GGACTCGGTC TGCATTAGGG ATGAGATCTT
  TGATGGATTC TTGATTACTT TCCAGAGAGT TTTGGGATGG TAGCCAAGCA CTTACAGGAG
  ATCTGAAGCT GCGAAGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51062480	NES13894515	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37520899					SNP	T	T	T	T	C	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51062480	NES13894515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152723725 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	within coordinates